PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g030360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 68aa    MW: 7940.31 Da    PI: 9.0029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g030360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-102421055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Sopen12g030360.1  2 QKRRERINERLRILQGLVPNG-----TKVDLSTMLEEAVHYVKFLQ 42
                      79*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.275141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-6247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-10246No hitNo description
PfamPF000101.1E-7242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-13259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MQKRRERINE RLRILQGLVP NGTKVDLSTM LEEAVHYVKF LQTQIKLLSS DDMWMYAPIA  60
YNGMGIDL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-32HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060572.14e-43PREDICTED: transcription factor bHLH84-like
SwissprotQ84WK06e-37BH085_ARATH; Transcription factor bHLH85
TrEMBLF6GZM72e-37F6GZM7_VITVI; Putative uncharacterized protein
TrEMBLM5XIA24e-37M5XIA2_PRUPE; Uncharacterized protein
STRINGVIT_18s0001g09210.t016e-37(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-28ROOT HAIR DEFECTIVE 6-LIKE 2